CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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VDAG_00222
(
Verticillium dahliae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
VDAG_00222
T31378_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDAG_00222T0
RRM
443
492
EECGDKYGRVERLYFDVENRQVFIKFTDQVSGLRAVSELNGRVFNGNTVA
Links
Other
RRM
family RBPs
Other
Verticillium dahliae
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
VDBG_00609
Verticillium albo atrum
VDBG_00609
N
1.000
GLRG_07477
Colletotrichum graminicola
GLRG_07477
N
0.843
estExt_Genewise1.C_70446
Cryphonectria parasitica
estExt_Genewise1.C_70446
N
0.800
FVEG_02810
Fusarium verticillioides
FVEG_02810
N
0.780
FGSG_10088
Fusarium graminearum
FGSG_10088
N
0.780
fgenesh1_pm.C_scaffold_11000127
Trichoderma atroviride
fgenesh1_pm.C_scaffold_11000127
N
0.760
FOXG_05320
Fusarium oxysporum
FOXG_05320
N
0.760
gw1.3.233.1
Trichoderma virens
gw1.3.233.1
N
0.760
fgenesh1_pm.C_scaffold_23000036
Trichoderma reesei
fgenesh1_pm.C_scaffold_23000036
N
0.760
MGG_06188
Magnaporthe oryzae
MGG_06188
N
0.736