CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pm.C_scaffold_11000127
(
Trichoderma atroviride
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh1_pm.C_scaffold_11000127
T52065_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_11000127
RRM
458
504
GEKYGRVERLYIDVETRQVFIKFTDQVSALRAVNELDGRVFNGNNIM
Links
Other
RRM
family RBPs
Other
Trichoderma atroviride
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pm.C_scaffold_23000036
Trichoderma reesei
fgenesh1_pm.C_scaffold_23000036
N
0.979
gw1.3.233.1
Trichoderma virens
gw1.3.233.1
N
0.936
GLRG_07477
Colletotrichum graminicola
GLRG_07477
N
0.824
FOXG_05320
Fusarium oxysporum
FOXG_05320
N
0.820
FVEG_02810
Fusarium verticillioides
FVEG_02810
N
0.820
FGSG_10088
Fusarium graminearum
FGSG_10088
N
0.820
estExt_Genewise1.C_70446
Cryphonectria parasitica
estExt_Genewise1.C_70446
N
0.780
VDAG_00222
Verticillium dahliae
VDAG_00222
N
0.760
VDBG_00609
Verticillium albo atrum
VDBG_00609
N
0.760
e_gw1.5.1248.1
Nectria haematococca
e_gw1.5.1248.1
N
0.755
MGG_06188
Magnaporthe oryzae
MGG_06188
N
0.755