CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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WUBG_02225
(
Wuchereria bancrofti
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
WUBG_02225
T31506_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
etr-1
M174_0.6
Caenorhabditis elegans
KKUDUGU
RNAcompete
Ray et al.(2013)
RNCMPT00183
0.710
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
WUBG_02225T0
RRM
24
91
MFVGQIPRSWGEAECRELFEQFGSVCQLNVLRDKVTQTSRGCCFVTYYKRADAIAAQAALHNIRVLPQ
WUBG_02225T0
RRM
111
178
LFVGMLNKKLTEDDVREMFAQFGHIEDCTVLKDSEGKSRGCAFVTFAHRSCAQQAIKQVHLSQTMEGC
WUBG_02225T0
RRM
410
480
LFIYHLPQDFTDNDLYTTFSPFGSIISAKVFIDKQTNLSKCFGFVSYDNVVSAQNAISALNGFQIGSKRLK
Links
Other
RRM
family RBPs
Other
Wuchereria bancrofti
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOAG_01549
Loa loa
LOAG_01549
I
0.986
Bm1_47110
Brugia malayi
Bm1_47110
N
0.850
etr-1
Caenorhabditis elegans
T01D1.2
D
0.710