etr-1 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 T01D1.2 T46225_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
etr-1
M174_0.6		 Caenorhabditis elegans KKUDUGU RNAcompete
Ray et al.(2013)
RNCMPT00183 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret_CONSTRUCT
M229_0.6 		RNAcompete CONSTRUCTS UKUGUGU RNAcompete
Ray et al.(2013)
RNCMPT00270 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M174_0.6 RRM 57 126
M174_0.6 RRM 144 212
M174_0.6 RRM 505 575

RNA Binding Domains

Protein ID Domain From To Sequence
T01D1.2a.1 RRM 57 126
T01D1.2a.1 RRM 144 212
T01D1.2a.1 RRM 501 571
T01D1.2a.2 RRM 57 126
T01D1.2a.2 RRM 144 212
T01D1.2a.2 RRM 501 571
T01D1.2a.3 RRM 57 126
T01D1.2a.3 RRM 144 212
T01D1.2a.3 RRM 501 571
T01D1.2a.4 RRM 57 126
T01D1.2a.4 RRM 144 212
T01D1.2a.4 RRM 501 571
T01D1.2b RRM 269 339
T01D1.2c RRM 78 122
T01D1.2d RRM 57 126
T01D1.2d RRM 144 209
T01D1.2d RRM 452 522
T01D1.2e RRM 57 126
T01D1.2e RRM 144 212
T01D1.2e RRM 503 573
T01D1.2f RRM 57 126
T01D1.2f RRM 144 212
T01D1.2f RRM 505 575
T01D1.2g RRM 57 126
T01D1.2g RRM 144 212
T01D1.2g RRM 430 500

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN02786 Caenorhabditis brenneri CBN02786 I 0.938
CBG06972 Caenorhabditis briggsae CBG06972 I 0.929
CRE18292 Caenorhabditis remanei CRE18292 I 0.910
Ppa-etr-1 Pristionchus pacificus PPA28330 I 0.845
ISCW008885 Ixodes scapularis ISCW008885 I 0.775
GG23781 Drosophila erecta FBgn0115920 I 0.761
GM26796 Drosophila sechellia FBgn0181649 I 0.761
SNAPOd2T00007754001 Oikopleura dioica SNAPOd2T00007754001 I 0.761
GD23834 Drosophila simulans FBgn0195204 I 0.761
GF19661 Drosophila ananassae FBgn0096668 I 0.761
GI17947 Drosophila mojavensis FBgn0140687 I 0.761
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.746
amel4_ncbi_hmm2201 Apis mellifera amel4_ncbi_hmm2201 I 0.746
e_gw.982.9.1 Nematostella vectensis e_gw.982.9.1 I 0.746
HEXA Macaca mulatta ENSMMUG00000010687 I 0.718
WUBG_04928 Wuchereria bancrofti WUBG_04928 I 0.718
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.718
BRUNOL6 Homo sapiens ENSG00000140488 D 0.718
LOAG_01549 Loa loa LOAG_01549 I 0.710
WUBG_02225 Wuchereria bancrofti WUBG_02225 I 0.710
136083 Helobdella robusta 136083 I 0.704
ISCW010799 Ixodes scapularis ISCW010799 I 0.704