CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PK19527.1
(
Cannabis sativa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PK19527.1
T31733_0.6
Cannabis sativa genome (2012-Feb-20)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK19527.1
RRM
173
246
IFVGNLPSWIKKNDVSEFFRQFGPIKDVILIKAHEHTERNAGFGFVLYEGSTATNSALKAVEFDGVEFHGRILT
Links
Other
RRM
family RBPs
Other
Cannabis sativa
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa018727m
Prunus persica
ppa018727m
N
0.797
MDP0000234914
Malus x domestica
MDP0000234914
N
0.770
cassava4432.m1
Manihot esculenta
cassava4432.m1
N
0.770
XM_002871069.1
Arabidopsis lyrata
fgenesh2_kg.6__398__AT5G04810.1
N
0.703
AT5G04810
Arabidopsis thaliana
AT5G04810-TAIR-G
N
0.703