CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AT5G04810
(
Arabidopsis thaliana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AT5G04810-TAIR-G
T32804_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G04810.1-P
RRM
167
237
IFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILT
Links
Other
RRM
family RBPs
Other
Arabidopsis thaliana
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002871069.1
Arabidopsis lyrata
fgenesh2_kg.6__398__AT5G04810.1
N
1.000
cassava4432.m1
Manihot esculenta
cassava4432.m1
N
0.784
ppa018727m
Prunus persica
ppa018727m
N
0.743
PK19527.1
Cannabis sativa
PK19527.1
N
0.703