CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s10130g1t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s10130g1t1
T31960_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s10130g1t1
RRM
4
59
LYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADGTRH
DGIL_AUG5s10130g1t1
RRM
56
103
GTRHKYKVAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVF
DGIL_AUG5s10130g1t1
RRM
127
195
VYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKT
DGIL_AUG5s10130g1t1
RRM
231
299
LYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDDGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLY
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s9152g1t1
Acyrtosiphon pisum
DGIL_AUG5s9152g1t1
I
0.801
DGIL_AUG5s5076g2t1
Acyrtosiphon pisum
DGIL_AUG5s5076g2t1
I
0.734
DGIL_AUG5s1591g1t1
Acyrtosiphon pisum
DGIL_AUG5s1591g1t1
I
0.713