DGIL_AUG5s1591g1t1 (Acyrtosiphon pisum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 DGIL_AUG5s1591g1t1 T32027_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
DGIL_AUG5s1591g1t1 RRM 4 74
DGIL_AUG5s1591g1t1 RRM 92 161
DGIL_AUG5s1591g1t1 RRM 185 253
DGIL_AUG5s1591g1t1 RRM 289 357

Links

Other RRM family RBPs
Other Acyrtosiphon pisum RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.928
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.892
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.786
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.786
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.786
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.786
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.779
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.779
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.779
PHUM617090 Pediculus humanus PHUM617090 I 0.776
AAEL010318 Aedes aegypti AAEL010318 I 0.775
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.764
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.764
AGAP011092 Anopheles gambiae AGAP011092 I 0.761
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.730
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.726
GH21052 Drosophila grimshawi FBgn0128514 I 0.720
ISCW014211 Ixodes scapularis ISCW014211 I 0.716
DGIL_AUG5s10130g1t1 Acyrtosiphon pisum DGIL_AUG5s10130g1t1 N 0.713
GK19652 Drosophila willistoni FBgn0221650 I 0.712
GJ21671 Drosophila virilis FBgn0208790 I 0.712
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.710
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.710
GI18654 Drosophila mojavensis FBgn0141393 I 0.709
GE11925 Drosophila yakuba FBgn0229707 I 0.707
GG21846 Drosophila erecta FBgn0114024 I 0.707
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.707
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.707
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.707
LOC100054235 Equus caballus ENSECAG00000009396 I 0.707
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.707
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.707
PABPC4 Homo sapiens ENSG00000090621 D 0.707
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.707
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.707
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.707
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.707
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.707
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.707
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.707
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.707
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.707
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.707
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.707
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.707
Gm10110 Mus musculus ENSMUSG00000062093 I 0.707
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.707
PABPC4 Gallus gallus ENSGALG00000003800 I 0.706
GL11548 Drosophila persimilis FBgn0149157 I 0.705
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.705
pabpc1b Danio rerio ENSDARG00000021140 I 0.704
PABPC1 Homo sapiens ENSG00000070756 D 0.703
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.703
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.703
P20965 Xenopus laevis P20965 I 0.703
CAA40721 Xenopus laevis CAA40721 I 0.703
AAH52100 Xenopus laevis AAH52100 I 0.703
AAA60936 Xenopus laevis AAA60936 I 0.703
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.703
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.703
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.703
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.703
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.703
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.703
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.703
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.703
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.703
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.703
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.703
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.703
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.703
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.703
AAH73435 Xenopus laevis AAH73435 I 0.702
GM21847 Drosophila sechellia FBgn0176724 I 0.700
pAbp Drosophila melanogaster FBgn0261619 D 0.700