CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm271084
(
Nasonia vitripennis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
nasonia_NCBI_hmm271084
T32190_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm271084
RRM
138
190
KDEAFFQHFAKFGKMVYYETIRDKKGRLSYGYVQYFEESDAERARKNCDPIYK
Links
Other
RRM
family RBPs
Other
Nasonia vitripennis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm197004
Nasonia vitripennis
nasonia_NCBI_hmm197004
N
0.927
nasonia_NCBI_hmm141274
Nasonia vitripennis
nasonia_NCBI_hmm141274
N
0.906
nasonia_NCBI_hmm20434
Nasonia vitripennis
nasonia_NCBI_hmm20434
N
0.887
nasonia_NCBI_hmm128374
Nasonia vitripennis
nasonia_NCBI_hmm128374
N
0.887
nasonia_NCBI_hmm442714
Nasonia vitripennis
nasonia_NCBI_hmm442714
N
0.887
nasonia_NCBI_hmm220254
Nasonia vitripennis
nasonia_NCBI_hmm220254
N
0.870
nasonia_NCBI_hmm142714
Nasonia vitripennis
nasonia_NCBI_hmm142714
N
0.868
nasonia_NCBI_hmm279264
Nasonia vitripennis
nasonia_NCBI_hmm279264
N
0.868
nasonia_NCBI_hmm322654
Nasonia vitripennis
nasonia_NCBI_hmm322654
N
0.830
nasonia_NCBI_hmm58274
Nasonia vitripennis
nasonia_NCBI_hmm58274
N
0.736