CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIOSIBCE030235
(
Oryza indica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BGIOSIBCE030235
T33069_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSIBCE030235
RRM
67
122
FVRMFGLMCQVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQ
BGIOSIBCE030235
RRM
146
212
IFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMNGTSGP
BGIOSIBCE030235
RRM
228
292
VFVGGLDPNVSEDDLRQTFSQYGEISSVKIPVGKQCGFVQFVQRKNAEDALQGLNGSTIGKQTVR
Links
Other
RRM
family RBPs
Other
Oryza indica
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os09g28810
Oryza sativa
LOC_Os09g28810
I
0.850
GRMZM2G467907
Zea mays
GRMZM2G467907
I
0.838
GRMZM2G168163
Zea mays
GRMZM2G168163
I
0.833
Sb02g026820
Sorghum bicolor
Sb02g026820
I
0.816
BRADI4G32380
Brachypodium distachyon
BRADI4G32380
N
0.816
PDK_20s1512141g001
Phoenix dactylifera
PDK_20s1512141g001
N
0.756