CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI1G57570
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI1G57570
T33157_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G57570.1
RRM
24
95
LFVGGIPSSAQEGELRGHFARFGAVRSVVVMRDRETGHGRGFGFVEFEGEDAAAKALGDGEKPKHFICGREV
BRADI1G57570.1
RRM
150
219
VFVGGLRDNITEDEFRAYFEAFGTVTDVVVIYDSLTNRSRGFGFVTFDSEEAVRKVMGKSFHDLKGTRVE
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G006071
Zea mays
GRMZM2G006071
N
0.810
LOC_Os07g03240
Oryza sativa
LOC_Os07g03240
N
0.789
BGIOSIBCE023558
Oryza indica
BGIOSIBCE023558
N
0.789
GRMZM2G042343
Zea mays
GRMZM2G042343
N
0.703