CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G042343
(
Zea mays
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GRMZM2G042343
T54033_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G042343_P01
RRM
10
72
LFVGGIPAGAQEADLRAHFARFGEVRSVVVMRDRETGHGRGFGFVEFEDKAAAAAAAALGDAD
GRMZM2G042343_P01
RRM
139
208
VFVGGLQDDTTEEEFRAYFETFGTVTDVAVIYDSATNRSRGFGFVTFDSEEAVGKVMRQSFHDLNGTKVE
GRMZM2G042343_P02
RRM
10
72
LFVGGIPAGAQEADLRAHFARFGEVRSVVVMRDRETGHGRGFGFVEFEDKAAAAAAAALGDAD
GRMZM2G042343_P02
RRM
139
208
VFVGGLQDDTTEEEFRAYFETFGTVTDVAVIYDSATNRSRGFGFVTFDSEEAVGKVMRQSFHDLNGTKVE
GRMZM2G042343_P03
RRM
10
72
LFVGGIPAGAQEADLRAHFARFGEVRSVVVMRDRETGHGRGFGFVEFEDKAAAAAAAALGDAD
GRMZM2G042343_P03
RRM
139
208
VFVGGLQDDTTEEEFRAYFETFGTVTDVAVIYDSATNRSRGFGFVTFDSEEAVGKVMRQSFHDLNGTKVE
Links
Other
RRM
family RBPs
Other
Zea mays
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G006071
Zea mays
GRMZM2G006071
N
0.750
BRADI1G57570
Brachypodium distachyon
BRADI1G57570
N
0.703