CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI3G52270
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI3G52270
T33263_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI3G52270.1
RRM
5
70
VKVHNVSLQASERDIKEFFCFSGNIIHVEMQSGDQRSQFAYITFKDDQEAERAMLLTGATIVDMAV
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G035719
Zea mays
GRMZM2G035719
N
0.788
GRMZM2G414304
Zea mays
GRMZM2G414304
N
0.788
LOC_Os04g50790
Oryza sativa
LOC_Os04g50790
N
0.773
BGIOSIBCE016423
Oryza indica
BGIOSIBCE016423
N
0.773
SB06G027200
Sorghum bicolor
Sb06g027200
N
0.758
SB04G031100
Sorghum bicolor
Sb04g031100
N
0.758
LOC_Os04g53330
Oryza sativa
LOC_Os04g53330
N
0.754
BGIOSIBCE016670
Oryza indica
BGIOSIBCE016670
N
0.754
BRADI5G20150
Brachypodium distachyon
BRADI5G20150
N
0.727
Glyma01g01950.1
Glycine max
Glyma01g01950.1
N
0.701
Glyma09g33960.1
Glycine max
Glyma09g33960.1
N
0.701