CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBG05376
(
Caenorhabditis briggsae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBG05376
T33884_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG05376
RRM
55
124
VFIGNVDFGSSIEDIEEHFKGCGEIIRTTIPKDKFTKKQKNFAYIEFASAESIENALVMNGSLFRSRQIV
Links
Other
RRM
family RBPs
Other
Caenorhabditis briggsae
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG05375
Caenorhabditis briggsae
CBG05375
N
1.000
EEED8
Caenorhabditis elegans
EEED8
N
0.843
CBG05418
Caenorhabditis briggsae
CBG05418
N
0.829
CRE30217
Caenorhabditis remanei
CRE30217
N
0.771
CRE30220
Caenorhabditis remanei
CRE30220
N
0.729
CRE30229
Caenorhabditis remanei
CRE30229
N
0.729
CRE30215
Caenorhabditis remanei
CRE30215
N
0.714
CRE30216
Caenorhabditis remanei
CRE30216
N
0.700