CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBG09034
(
Caenorhabditis briggsae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBG09034
T33895_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG09034
RRM
108
171
LFVGNLPNEVKEAELKELFSPHGDIAECYLSGKGFAFLRLDTRAHAESAKEAIDGRIIHGRQVR
CBG09034
RRM
181
247
IRVKELSPTVSNEMLYHAFSHFGDVERAVHIVDEKGRPTGEGIVEFERKPNCNEAMAAIREKVFLLT
Links
Other
RRM
family RBPs
Other
Caenorhabditis briggsae
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN08804
Caenorhabditis brenneri
CBN08804
N
1.000
CRE04498
Caenorhabditis remanei
CRE04498
N
0.992
psf-1
Caenorhabditis elegans
F25B5.7
N
0.977
LOAG_01506
Loa loa
LOAG_01506
N
0.885
Bm1_47275
Brugia malayi
Bm1_47275
N
0.885
WUBG_04674
Wuchereria bancrofti
WUBG_04674
N
0.885
Minc08359
Meloidogyne incognita
Minc08359
N
0.725