CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBN09841
(
Caenorhabditis brenneri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBN09841
T34017_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN09841
RRM
55
124
VFVGNVDFGSTIEELEAHFKGCGTITRTTIPKDKYTQRQKNFAYIEFEDKDSVEMALVMHETMFRDRRIV
Links
Other
RRM
family RBPs
Other
Caenorhabditis brenneri
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN00783
Caenorhabditis brenneri
CBN00783
N
0.857
CBN09794
Caenorhabditis brenneri
CBN09794
N
0.814
CRE30217
Caenorhabditis remanei
CRE30217
N
0.743
CRE30216
Caenorhabditis remanei
CRE30216
N
0.729
CBG05418
Caenorhabditis briggsae
CBG05418
N
0.729
CRE30229
Caenorhabditis remanei
CRE30229
N
0.714
CRE30215
Caenorhabditis remanei
CRE30215
N
0.714
EEED8
Caenorhabditis elegans
EEED8
N
0.714