CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q2KIC3_BOVIN
(
Bos taurus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSBTAG00000008640
T34818_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000011394
RRM
135
212
VYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRESVDLALKLLDEDEIRGYKLH
ENSBTAP00000011394
RRM
299
342
RNISKYIMLGRHPDGVASVSFRDPEEADYCIQTLNRWFGGRQIT
Links
Other
RRM
family RBPs
Other
Bos taurus
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HTATSF1
Pan troglodytes
ENSPTRG00000022315
N
0.873
LOC100054669
Equus caballus
ENSECAG00000009156
N
0.837
Ame_R008048
Ailuropoda melanoleuca
Ame_R008048
N
0.837
HTATSF1
Felis catus
ENSFCAG00000003458
N
0.837
HTATSF1
Canis familiaris
ENSCAFG00000023294
N
0.837
HTATSF1
Macaca mulatta
ENSMMUG00000006450
N
0.830
HTATSF1
Pteropus vampyrus
ENSPVAG00000010281
N
0.830
HTATSF1
Oryctolagus cuniculus
ENSOCUG00000012570
N
0.830
HTATSF1
Loxodonta africana
ENSLAFG00000014307
N
0.830
HTATSF1
Homo sapiens
ENSG00000102241
N
0.830
LOC100414869
Callithrix jacchus
ENSCJAG00000003676
N
0.830
ENSPPYG00000020765
Pongo pygmaeus
ENSPPYG00000020765
N
0.830
HTATSF1
Gorilla gorilla
ENSGGOG00000026072
N
0.830
HTATSF1
Dasypus novemcinctus
ENSDNOG00000002254
N
0.822
HTATSF1
Tursiops truncatus
ENSTTRG00000002269
N
0.822
HTATSF1
Sorex araneus
ENSSARG00000005193
N
0.822
HTATSF1
Myotis lucifugus
ENSMLUG00000009234
N
0.815
HTATSF1
Cavia porcellus
ENSCPOG00000010493
N
0.815
Htatsf1
Dipodomys ordii
ENSDORG00000006140
N
0.807
Htatsf1
Mus musculus
ENSMUSG00000067873
N
0.800
Htatsf1
Rattus norvegicus
ENSRNOG00000027761
N
0.800
HTATSF1
Macropus eugenii
ENSMEUG00000004133
N
0.711
XM_001362552.1
Monodelphis domestica
ENSMODG00000014087
N
0.711
HTATSF1
Vicugna pacos
ENSVPAG00000004569
N
0.704