ENSCJAG00000005407 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000005407 T35522_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.823
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.823
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.823
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000009874 RRM 11 81
ENSCJAP00000009874 RRM 103 172

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.796
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.792
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.790
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.789
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.789
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.789
HNRNPA1 Homo sapiens ENSG00000135486 D 0.789
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.789
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.789
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.789
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.789
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.789
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.789
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.789
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.789
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.789
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.789
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.789
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.789
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.789
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.789
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.789
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.789
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.789
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.789
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.789
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.782
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.782
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.782
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.782
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.782
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.782
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.782
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.778
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.776
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.776
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.776
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.776
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.776
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.776
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.776
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.776
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.776
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.776
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.776
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.775
LOC100054206 Equus caballus ENSECAG00000006699 I 0.774
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.774
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.774
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.769
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.769
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.769
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.769
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.769
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.769
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.768
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.762
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.762
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.762
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.762
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.762
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.762
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.762
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.761
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.761
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.760
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.759
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.755
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.755
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.755
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.755
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.755
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.755
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.755
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.755
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.755
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.755
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.754
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.753
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.753
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.753
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.753
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.752
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.750
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.748
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.748
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.748
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.748
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.747
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.747
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.747
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.746
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.746
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.746
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.746
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.743
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.743
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.741
LOC785445 Bos taurus ENSBTAG00000025621 I 0.741
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.741
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.740
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.739
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.736
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.736
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.736
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.735
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.735
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.735
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.733
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.733
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.733
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.731
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.731
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.729
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.729
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.728
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.728
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.728
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.728
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.728
AAH72090 Xenopus laevis AAH72090 I 0.728
CBF67672 Xenopus laevis CBF67672 I 0.728
CBU92546 Xenopus laevis CBU92546 I 0.728
AAH45260 Xenopus laevis AAH45260 I 0.728
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.728
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.727
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.727
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.727
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.726
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.726
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.726
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.725
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.725
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.724
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.722
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.721
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.721
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.721
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.721
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.721
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.721
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.721
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.718
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.717
AAA49742 Xenopus laevis AAA49742 I 0.714
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.714
AAA49741 Xenopus laevis AAA49741 I 0.714
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.714
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.714
CBF67555 Xenopus laevis CBF67555 I 0.714
CBU92428 Xenopus laevis CBU92428 I 0.714
P17130 Xenopus laevis P17130 I 0.714
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.714
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.714
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.714
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.713
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.712
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.711
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.711
ENSCAFG00000002232 Canis familiaris ENSCAFG00000002232 I 0.711
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.711
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.710
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.710
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.707
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.707
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.706
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.706
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.705
ENSCJAG00000002606 Callithrix jacchus ENSCJAG00000002606 I 0.704
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.704
ENSCJAG00000034783 Callithrix jacchus ENSCJAG00000034783 I 0.704
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.703
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.701
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.701
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.701
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.701