CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCING00000003248
(
Ciona intestinalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCING00000003248
T35375_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCINP00000006675
RRM
2
48
VFHHRLVFDRESGKPKGYGFAEYQDKETALSSMRNLNGRELHGRPLR
Links
Other
RRM
family RBPs
Other
Ciona intestinalis
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSMGAG00000004139
Meleagris gallopavo
ENSMGAG00000004139
N
0.745
CSTF2
Spermophilus tridecemlineatus
ENSSTOG00000001797
N
0.723
CSTF2
Ochotona princeps
ENSOPRG00000003106
N
0.723
CSTF2
Otolemur garnettii
ENSOGAG00000011192
N
0.723
LOC100062520
Equus caballus
ENSECAG00000004701
N
0.706