ENSCJAG00000017019 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000017019 T35639_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.750
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.750
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.750
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000031291 RRM 16 87
ENSCJAP00000031291 RRM 105 174

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.729
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.716
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.716
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.716
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.716
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.716
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.716
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.716
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.716
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.716
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.716
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.716
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.716
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.716
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.716
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.716
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.716
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.716
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.716
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.716
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.716
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.716
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.716
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.716
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.716
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.716
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.716
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.716
HNRNPA1 Homo sapiens ENSG00000135486 D 0.716
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.716
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.716
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.713
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.709
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.709
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.709
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.709
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.709
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.709
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.709
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.709
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.707
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.706
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.703
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.703
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.703
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.703
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.703
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.703
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.703
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.703
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.703
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.703
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.703
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.703
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.703
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.703
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.703
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.701
LOC100054206 Equus caballus ENSECAG00000006699 I 0.701
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.701
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.701
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.701