CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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srsf11
(
Danio rerio
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDARG00000004342
T36038_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000013110
RRM
9
79
IQVTNVSPSSTAEQMRTLFGFIGSIDELRLFPPDDSPLPVTSRVCFVKFHEPESVGVSQHLTNTVFVDRAL
Links
Other
RRM
family RBPs
Other
Danio rerio
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SRSF11
Takifugu rubripes
ENSTRUG00000017369
N
0.901
SRSF11
Tetraodon nigroviridis
ENSTNIG00000010494
N
0.901
SRSF11
Oryzias latipes
ENSORLG00000007753
N
0.887
SRSF11
Takifugu rubripes
ENSTRUG00000009316
N
0.887
SRSF11
Gasterosteus aculeatus
ENSGACG00000009346
N
0.887
SRSF11
Oryzias latipes
ENSORLG00000017357
N
0.873
SRSF11
Tetraodon nigroviridis
ENSTNIG00000008514
N
0.873
SRSF11
Gasterosteus aculeatus
ENSGACG00000017855
N
0.859
SRSF11
Pan troglodytes
ENSPTRG00000000852
N
0.833
ENSPPYG00000001245
Pongo pygmaeus
ENSPPYG00000001245
N
0.833
Srsf11
Dipodomys ordii
ENSDORG00000000669
N
0.833
LOC100400412
Callithrix jacchus
ENSCJAG00000017704
N
0.833
SRSF11
Pteropus vampyrus
ENSPVAG00000011918
N
0.833
SRSF11
Sus scrofa
ENSSSCG00000003791
N
0.833
Ame_R020987
Ailuropoda melanoleuca
Ame_R020987
N
0.833
SRSF11
Anolis carolinensis
ENSACAG00000013654
N
0.833
Q148M1_BOVIN
Bos taurus
ENSBTAG00000015474
N
0.833
SRSF11
Tursiops truncatus
ENSTTRG00000015054
N
0.833
D3ZDC8_RAT
Rattus norvegicus
ENSRNOG00000029592
N
0.833
SRSF11
Procavia capensis
ENSPCAG00000012684
N
0.833
SRSF11
Myotis lucifugus
ENSMLUG00000006203
N
0.833
SFRS11
Macaca mulatta
ENSMMUG00000013852
N
0.833
SRSF11
Microcebus murinus
ENSMICG00000005537
N
0.833
ENSOCUG00000025440
Oryctolagus cuniculus
ENSOCUG00000025440
N
0.833
SRSF11
Loxodonta africana
ENSLAFG00000015882
N
0.833
SRSF11
Gorilla gorilla
ENSGGOG00000005774
N
0.833
SRSF11
Homo sapiens
ENSG00000116754
N
0.833
ENSOCUG00000024114
Oryctolagus cuniculus
ENSOCUG00000024114
N
0.833
ENSOCUG00000002001
Oryctolagus cuniculus
ENSOCUG00000002001
N
0.833
SRSF11
Ornithorhynchus anatinus
ENSOANG00000015528
N
0.833
Srsf11
Mus musculus
ENSMUSG00000055436
N
0.833
AAI10935
Xenopus laevis
AAI10935
N
0.831
SRSF11
Erinaceus europaeus
ENSEEUG00000002456
N
0.819
SRSF11
Macropus eugenii
ENSMEUG00000000319
N
0.819
SRSF11
Sorex araneus
ENSSARG00000005811
N
0.819
AAH72078
Xenopus laevis
AAH72078
N
0.806
SRSF11
Monodelphis domestica
ENSMODG00000000559
N
0.806
srsf11
Xenopus tropicalis
ENSXETG00000012371
N
0.806
ENSCJAG00000009424
Callithrix jacchus
ENSCJAG00000009424
N
0.736
Q5ZJ42_CHICK
Gallus gallus
ENSGALG00000011305
N
0.736
SRSF11
Cavia porcellus
ENSCPOG00000009554
N
0.722