rbm4.3 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000022129 T36104_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
rbm4.3
M212_0.6		 Danio rerio ACGRCG RNAcompete
Ray et al.(2013)
RNCMPT00248 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M212_0.6 RRM 4 66
M212_0.6 RRM 82 141

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000037030 RRM 4 66
ENSDARP00000037030 RRM 82 141

Links

Other RRM family RBPs
Other Danio rerio RBPs

5 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTNIG00000005668 Tetraodon nigroviridis ENSTNIG00000005668 I 0.829
ENSTRUG00000010623 Takifugu rubripes ENSTRUG00000010623 I 0.821
ENSORLG00000012473 Oryzias latipes ENSORLG00000012473 I 0.752
ENSORLG00000011589 Oryzias latipes ENSORLG00000011589 I 0.752
ENSGACG00000019980 Gasterosteus aculeatus ENSGACG00000019980 I 0.748