CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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raver1
(
Danio rerio
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDARG00000052617
T36168_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000040082
RRM
94
157
IIIKNLPADISNQEVHELLGNYDLKYCFVDKYKGTAFVTLLNGEQAQFAIKEFHQYVLRDREIS
ENSDARP00000040082
RRM
167
237
LCIANLPRAFTQQQFEELVRPFGNIERCFLVHSATTGHSKGYGFVEYMKKDSAARAKSELLGKQLGSRMLY
Links
Other
RRM
family RBPs
Other
Danio rerio
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RAVER1
Oryzias latipes
ENSORLG00000005458
N
0.948
RAVER1
Tetraodon nigroviridis
ENSTNIG00000018570
N
0.904
RAVER1
Procavia capensis
ENSPCAG00000002699
N
0.763
Raver1
Mus musculus
ENSMUSG00000010205
N
0.756
Raver1
Rattus norvegicus
ENSRNOG00000020710
N
0.756