CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RAVER1
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000005458
T40132_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000006869
RRM
56
119
IIIKNLPADITNQEVHELLGNYDLKYCFVDKYKGTAFVTLLNGEQAQCAIKEFHQHLLRDREIS
ENSORLP00000006869
RRM
129
199
LCIANLPQAFTQQQFEELVRPFGNLERCFLVYSATTGHSKGYGFVEYMKKDSAARAKSELLGKQLGSRMLY
ENSORLP00000006869
RRM
218
287
LCVDRLPASLLTAQDIRSALADTHAPVFCQLAQGQDGSFRRFAVLEFTTAEMAESQRLTDGRLLGGTHVR
ENSORLP00000006870
RRM
96
159
IIIKNLPADITNQEVHELLGNYDLKYCFVDKYKGTAFVTLLNGEQAQCAIKEFHQHLLRDREIS
ENSORLP00000006870
RRM
169
239
LCIANLPQAFTQQQFEELVRPFGNLERCFLVYSATTGHSKGYGFVEYMKKDSAARAKSELLGKQLGSRMLY
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
18 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
raver1
Danio rerio
ENSDARG00000052617
N
0.948
RAVER1
Tetraodon nigroviridis
ENSTNIG00000018570
N
0.911
TYK2
Takifugu rubripes
ENSTRUG00000009121
N
0.893
RAVER1
Gasterosteus aculeatus
ENSGACG00000013818
N
0.893
RAVER1
Procavia capensis
ENSPCAG00000002699
N
0.785
Raver1
Mus musculus
ENSMUSG00000010205
N
0.778
Raver1
Rattus norvegicus
ENSRNOG00000020710
N
0.778
RAVER1
Tursiops truncatus
ENSTTRG00000009552
N
0.714
RAVER1
Cavia porcellus
ENSCPOG00000001008
N
0.714
RAVER1
Microcebus murinus
ENSMICG00000010326
N
0.709
A4FUZ2_BOVIN
Bos taurus
ENSBTAG00000015721
N
0.709
RAVER1
Canis familiaris
ENSCAFG00000017861
N
0.709
RAVER1
Pteropus vampyrus
ENSPVAG00000003689
N
0.709
RAVER1
Loxodonta africana
ENSLAFG00000003664
N
0.704
RAVER1
Sus scrofa
ENSSSCG00000013650
N
0.704
RAVER1
Spermophilus tridecemlineatus
ENSSTOG00000003241
N
0.704
Raver1
Dipodomys ordii
ENSDORG00000010106
N
0.704
RAVER1
Felis catus
ENSFCAG00000009435
N
0.704