CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HTATSF1
(
Erinaceus europaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSEEUG00000010668
T36819_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000009729
RRM
137
214
VYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRESVDLALKLLDEDEIRGYKLH
Links
Other
RRM
family RBPs
Other
Erinaceus europaeus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HTATSF1
Homo sapiens
ENSG00000102241
N
0.987
HTATSF1
Procavia capensis
ENSPCAG00000010576
N
0.987
ENSMODG00000000199
Monodelphis domestica
ENSMODG00000000199
N
0.885
ENSCJAG00000004340
Callithrix jacchus
ENSCJAG00000004340
N
0.846