CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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U2AF2
(
Macropus eugenii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMEUG00000002346
T38163_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
U2AF2
M077_0.6
Homo sapiens
UUUUUYC
RNAcompete
Ray et al.(2013)
RNCMPT00079
0.712
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMEUP00000002133
RRM
134
162
LYVGNIPFGITEEAMMDFFNAQMRLERFT
ENSMEUP00000002133
RRM
244
314
LFIGGLPSYLNDDQVKELLTSFGQLKAFNLVKDSATGLSKGYAFCEYVDIKVTEQAITGLHGMQLGDKKLL
ENSMEUP00000002133
RRM
378
439
VEDVRDECSKYGVVKSIEIPRPMDGMEVPGCGKIFVEFTSVFDCQKAMQCLTGRKFANRVVV
Links
Other
RRM
family RBPs
Other
Macropus eugenii
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
U2AF2
Anolis carolinensis
ENSACAG00000015489
I
0.716
ENSMMUG00000004810
Macaca mulatta
ENSMMUG00000004810
I
0.712
U2AF2
Homo sapiens
ENSG00000063244
D
0.712
LOC100050729
Equus caballus
ENSECAG00000010110
I
0.712
Ame_R015025
Ailuropoda melanoleuca
Ame_R015025
I
0.712
ENSLAFG00000018056
Loxodonta africana
ENSLAFG00000018056
I
0.712
U2af2
Mus musculus
ENSMUSG00000030435
I
0.712
U2AF2
Pteropus vampyrus
ENSPVAG00000004540
I
0.712
LOC690372
Rattus norvegicus
ENSRNOG00000015914
I
0.712
U2AF2
Tursiops truncatus
ENSTTRG00000000987
I
0.712
U2AF2
Cavia porcellus
ENSCPOG00000001582
I
0.712
AAH44032
Xenopus laevis
AAH44032
I
0.707
u2af2
Xenopus tropicalis
ENSXETG00000019128
I
0.707
Q24JZ8_BOVIN
Bos taurus
ENSBTAG00000002830
I
0.707
U2AF2
Canis familiaris
ENSCAFG00000002551
I
0.707