LOC100050729 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000010110 T36604_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		1.000
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.798
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000008276 RRM 151 225
ENSECAP00000008276 RRM 261 331
ENSECAP00000008276 RRM 395 456

Links

Other RRM family RBPs
Other Equus caballus RBPs

61 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 1.000
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 1.000
U2af2 Mus musculus ENSMUSG00000030435 I 1.000
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 1.000
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 1.000
U2AF2 Homo sapiens ENSG00000063244 D 1.000
U2AF2 Cavia porcellus ENSCPOG00000001582 I 1.000
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 1.000
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.995
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.995
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.995
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.990
AAH44032 Xenopus laevis AAH44032 I 0.990
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.990
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.957
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.957
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.952
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.952
u2af2a Danio rerio ENSDARG00000012505 I 0.947
u2af2b Danio rerio ENSDARG00000011740 I 0.933
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.885
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.876
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.867
XM_001119590.1 Macaca mulatta ENSMMUG00000019197 I 0.856
U2AF2 Pan troglodytes ENSPTRG00000011523 I 0.856
U2af2 Dipodomys ordii ENSDORG00000003250 I 0.856
LOC100400743 Callithrix jacchus ENSCJAG00000017128 I 0.851
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.832
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.808
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.808
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.803
U2AF2 Felis catus ENSFCAG00000011504 I 0.803
GE15975 Drosophila yakuba FBgn0233531 I 0.798
GG19328 Drosophila erecta FBgn0111532 I 0.798
GL15893 Drosophila persimilis FBgn0153497 I 0.798
GF19596 Drosophila ananassae FBgn0096603 I 0.798
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.798
U2af50 Drosophila melanogaster FBgn0005411 D 0.798
GD24494 Drosophila simulans FBgn0195829 I 0.798
GM13406 Drosophila sechellia FBgn0168337 I 0.798
GK10063 Drosophila willistoni FBgn0212078 I 0.798
PHUM460480 Pediculus humanus PHUM460480 I 0.798
AGAP002908 Anopheles gambiae AGAP002908 I 0.793
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.793
AAEL002818 Aedes aegypti AAEL002818 I 0.793
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.793
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.793
GI14308 Drosophila mojavensis FBgn0137061 I 0.788
GH12033 Drosophila grimshawi FBgn0119512 I 0.788
185543 Helobdella robusta 185543 I 0.787
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.779
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.779
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.775
Smp_019690 Schistosoma mansoni Smp_019690 I 0.769
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.767
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.746
GJ19364 Drosophila virilis FBgn0206507 I 0.736
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.731
U2AF2 Macropus eugenii ENSMEUG00000002346 I 0.712
CBG15152 Caenorhabditis briggsae CBG15152 I 0.711
Aqu1.223751 Amphimedon queenslandica Aqu1.223751 I 0.705