CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PPARGC1A
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000000549
T39027_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000000664
RRM
676
739
IYVGKIRPDITRTELRDRFEVFGEIEECTVNLRDDGDSYGFITYRYTCDAFAALENGYTLRRSN
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ppargc1a
Mus musculus
ENSMUSG00000029167
N
0.984
Ame_R008203
Ailuropoda melanoleuca
Ame_R008203
N
0.984
PPARGC1A
Tursiops truncatus
ENSTTRG00000005327
N
0.984
PPARGC1A
Microcebus murinus
ENSMICG00000015390
N
0.984
PRGC1_BOVIN
Bos taurus
ENSBTAG00000017024
N
0.984
PPARGC1A
Canis familiaris
ENSCAFG00000016519
N
0.984
Ppargc1a
Dipodomys ordii
ENSDORG00000016276
N
0.984
PPARGC1A
Dasypus novemcinctus
ENSDNOG00000012977
N
0.984
PPARGC1A
Cavia porcellus
ENSCPOG00000001518
N
0.984
PPARGC1A
Callithrix jacchus
ENSCJAG00000013024
N
0.984
LOC100055716
Equus caballus
ENSECAG00000009164
N
0.984
PPARGC1A
Myotis lucifugus
ENSMLUG00000016307
N
0.984
PPARGC1A
Macaca mulatta
ENSMMUG00000001844
N
0.984
PPARGC1A
Gorilla gorilla
ENSGGOG00000009810
N
0.984
PPARGC1A
Oryctolagus cuniculus
ENSOCUG00000014668
N
0.984
PPARGC1A
Ornithorhynchus anatinus
ENSOANG00000006680
N
0.984
PPARGC1A
Homo sapiens
ENSG00000109819
N
0.984
ENSPPYG00000014640
Pongo pygmaeus
ENSPPYG00000014640
N
0.984
PPARGC1A
Sorex araneus
ENSSARG00000000575
N
0.984
Q6R2I4_SPETR
Spermophilus tridecemlineatus
ENSSTOG00000012522
N
0.984
Ppargc1a
Rattus norvegicus
ENSRNOG00000004473
N
0.984
PPARGC1A
Pteropus vampyrus
ENSPVAG00000004965
N
0.984
PPARGC1A
Erinaceus europaeus
ENSEEUG00000009219
N
0.969
PPARGC1A
Vicugna pacos
ENSVPAG00000003478
N
0.969
PPARGC1A
Ochotona princeps
ENSOPRG00000012899
N
0.969
PPARGC1A
Meleagris gallopavo
ENSMGAG00000012485
N
0.969
PPARGC1A
Loxodonta africana
ENSLAFG00000012981
N
0.953
Q60GU0_CHICK
Gallus gallus
ENSGALG00000014398
N
0.953
PPARGC1A
Procavia capensis
ENSPCAG00000016308
N
0.953
D7F2U6_ANOCA
Anolis carolinensis
ENSACAG00000000741
N
0.875
Q3Y595_FUGRU
Takifugu rubripes
ENSTRUG00000007210
N
0.828
PPARGC1A
Oryzias latipes
ENSORLG00000004788
N
0.812
PPARGC1A
Tetraodon nigroviridis
ENSTNIG00000002174
N
0.812