CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSMUSG00000072629
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000072629
T39420_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000098297
RRM
199
266
AKLNDNVRENFLRDMCKKYGEVEEVEILYNPKTKKHLGIAKVVFATVRGAKEAVQHLHSTSVMGNIIH
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
54 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SETD1B
Sus scrofa
ENSSSCG00000009806
N
0.985
SETD1B
Equus caballus
ENSECAG00000006549
N
0.985
SETD1B
Canis familiaris
ENSCAFG00000008167
N
0.985
SETD1B
Bos taurus
ENSBTAG00000004172
N
0.985
ENSRNOG00000001337
Rattus norvegicus
ENSRNOG00000001337
N
0.985
SETD1B
Oryctolagus cuniculus
ENSOCUG00000017708
N
0.985
SETD1B
Callithrix jacchus
ENSCJAG00000016930
N
0.985
SETD1B
Homo sapiens
ENSG00000139718
N
0.971
ENSMMUG00000012647
Macaca mulatta
ENSMMUG00000012647
N
0.971
SETD1B
Loxodonta africana
ENSLAFG00000026518
N
0.971
SETD1B
Gorilla gorilla
ENSGGOG00000006715
N
0.971
ENSOANG00000006955
Ornithorhynchus anatinus
ENSOANG00000006955
N
0.926
SETD1B
Anolis carolinensis
ENSACAG00000011162
N
0.926
SETD1B
Monodelphis domestica
ENSMODG00000023734
N
0.912
SETD1B
Taeniopygia guttata
ENSTGUG00000006093
N
0.897
SETD1B
Meleagris gallopavo
ENSMGAG00000004421
N
0.897
SET1B_CHICK
Gallus gallus
ENSGALG00000004324
N
0.897
AAH81016
Xenopus laevis
AAH81016
N
0.882
Q66J90
Xenopus laevis
Q66J90
N
0.882
setd1b
Xenopus tropicalis
ENSXETG00000003760
N
0.853
ENSDARG00000078930
Danio rerio
ENSDARG00000078930
N
0.824
setd1ba
Danio rerio
ENSDARG00000060847
N
0.824
SETD1B
Tetraodon nigroviridis
ENSTNIG00000009090
N
0.809
SETD1B
Oryzias latipes
ENSORLG00000008435
N
0.779
SETD1B
Takifugu rubripes
ENSTRUG00000009533
N
0.765
SETD1B
Gasterosteus aculeatus
ENSGACG00000017002
N
0.765
SETD1A
Echinops telfairi
ENSETEG00000014170
N
0.750
SETD1A
Monodelphis domestica
ENSMODG00000001726
N
0.750
SETD1A
Macropus eugenii
ENSMEUG00000003396
N
0.750
SETD1B
Gasterosteus aculeatus
ENSGACG00000011872
N
0.743
SETD1A
Homo sapiens
ENSG00000099381
N
0.735
SETD1A
Gorilla gorilla
ENSGGOG00000016052
N
0.735
SETD1A
Felis catus
ENSFCAG00000002588
N
0.735
SETD1A
Ornithorhynchus anatinus
ENSOANG00000013155
N
0.735
SETD1A
Oryctolagus cuniculus
ENSOCUG00000022182
N
0.735
SETD1A
Loxodonta africana
ENSLAFG00000023335
N
0.735
SETD1A
Ochotona princeps
ENSOPRG00000016034
N
0.735
Setd1a
Mus musculus
ENSMUSG00000042308
N
0.735
SETD1A
Cavia porcellus
ENSCPOG00000025456
N
0.735
Ame_R013286
Ailuropoda melanoleuca
Ame_R013286
N
0.735
Q4G026_RAT
Rattus norvegicus
ENSRNOG00000019045
N
0.735
SETD1A
Tursiops truncatus
ENSTTRG00000015493
N
0.735
SETD1A
Tarsius syrichta
ENSTSYG00000014425
N
0.735
SETD1A
Sorex araneus
ENSSARG00000005591
N
0.735
SETD1A
Tupaia belangeri
ENSTBEG00000009714
N
0.735
SETD1A
Procavia capensis
ENSPCAG00000014351
N
0.735
SETD1A
Bos taurus
ENSBTAG00000002345
N
0.735
ENSPPYG00000007296
Pongo pygmaeus
ENSPPYG00000007296
N
0.735
SETD1A
Sus scrofa
ENSSSCG00000007782
N
0.735
SETD1A
Pteropus vampyrus
ENSPVAG00000011049
N
0.735
LOC100415635
Callithrix jacchus
ENSCJAG00000003000
N
0.735
SETD1A
Pan troglodytes
ENSPTRG00000008024
N
0.735
SETD1A
Canis familiaris
ENSCAFG00000016758
N
0.735
SETD1B
Takifugu rubripes
ENSTRUG00000005579
N
0.704