CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBPMS
(
Otolemur garnettii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOGAG00000006285
T39845_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000005615
RRM
4
65
LFVSGLPLDIKPRELYLLFRPFKGYEGSPIKLTSKQPVGFVSFDSRSEAEAAKNALNXXXXX
Links
Other
RRM
family RBPs
Other
Otolemur garnettii
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000006553
Pongo pygmaeus
ENSPPYG00000006553
N
0.754
RBPMS
Takifugu rubripes
ENSTRUG00000000041
N
0.742
RBPMS
Gasterosteus aculeatus
ENSGACG00000019471
N
0.742
RBPMS
Oryzias latipes
ENSORLG00000004135
N
0.742
RBPMS
Homo sapiens
ENSG00000157110
N
0.731
RBPMS
Echinops telfairi
ENSETEG00000017582
N
0.731
LOC100392847
Callithrix jacchus
ENSCJAG00000012366
N
0.731
RBPMS
Choloepus hoffmanni
ENSCHOG00000008745
N
0.731
RBPMS
Cavia porcellus
ENSCPOG00000012799
N
0.731
RBPMS
Equus caballus
ENSECAG00000020735
N
0.731
RBPMS
Loxodonta africana
ENSLAFG00000000209
N
0.731
RBPMS
Monodelphis domestica
ENSMODG00000019006
N
0.731
Rbpms
Mus musculus
ENSMUSG00000031586
N
0.731
RBPMS
Oryctolagus cuniculus
ENSOCUG00000008572
N
0.731
RBPMS
Macaca mulatta
ENSMMUG00000000458
N
0.731
RBPMS
Myotis lucifugus
ENSMLUG00000009391
N
0.731
RBPMS
Canis familiaris
ENSCAFG00000006503
N
0.731
RBPMS
Meleagris gallopavo
ENSMGAG00000005088
N
0.731
RBPMS
Gallus gallus
ENSGALG00000010291
N
0.731
AAH60391
Xenopus laevis
AAH60391
N
0.731
RBPMS
Sus scrofa
ENSSSCG00000015846
N
0.731
RBPMS
Taeniopygia guttata
ENSTGUG00000001776
N
0.731
ENSPPYG00000018487
Pongo pygmaeus
ENSPPYG00000018487
N
0.731
RGD1561067
Rattus norvegicus
ENSRNOG00000013328
N
0.731
RBPMS
Pteropus vampyrus
ENSPVAG00000001661
N
0.731
Q2KI55_BOVIN
Bos taurus
ENSBTAG00000033727
N
0.731
RBPMS
Procavia capensis
ENSPCAG00000013493
N
0.731
RBPMS
Ochotona princeps
ENSOPRG00000013151
N
0.731
RBPMS
Anolis carolinensis
ENSACAG00000003012
N
0.731
Ame_R009021
Ailuropoda melanoleuca
Ame_R009021
N
0.731
rbpms
Xenopus tropicalis
ENSXETG00000011290
N
0.731
RBPMS
Vicugna pacos
ENSVPAG00000010991
N
0.731
RBPMS
Pan troglodytes
ENSPTRG00000020135
N
0.731
RBPMS
Tarsius syrichta
ENSTSYG00000013982
N
0.727
RBPMS
Tursiops truncatus
ENSTTRG00000012451
N
0.716
RBPMS
Sorex araneus
ENSSARG00000000274
N
0.716