CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBPMS
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000008572
T39661_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000007406
RRM
26
89
LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPE
ENSOCUP00000020399
RRM
5
68
LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPE
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q2KI55_BOVIN
Bos taurus
ENSBTAG00000033727
N
1.000
RBPMS
Canis familiaris
ENSCAFG00000006503
N
1.000
RBPMS
Choloepus hoffmanni
ENSCHOG00000008745
N
1.000
LOC100392847
Callithrix jacchus
ENSCJAG00000012366
N
1.000
AAH60391
Xenopus laevis
AAH60391
N
1.000
RBPMS
Vicugna pacos
ENSVPAG00000010991
N
1.000
rbpms
Xenopus tropicalis
ENSXETG00000011290
N
1.000
Ame_R009021
Ailuropoda melanoleuca
Ame_R009021
N
1.000
RBPMS
Cavia porcellus
ENSCPOG00000012799
N
1.000
RBPMS
Equus caballus
ENSECAG00000020735
N
1.000
RBPMS
Myotis lucifugus
ENSMLUG00000009391
N
1.000
RBPMS
Macaca mulatta
ENSMMUG00000000458
N
1.000
RBPMS
Monodelphis domestica
ENSMODG00000019006
N
1.000
Rbpms
Mus musculus
ENSMUSG00000031586
N
1.000
RBPMS
Meleagris gallopavo
ENSMGAG00000005088
N
1.000
RBPMS
Loxodonta africana
ENSLAFG00000000209
N
1.000
RBPMS
Echinops telfairi
ENSETEG00000017582
N
1.000
RBPMS
Homo sapiens
ENSG00000157110
N
1.000
RBPMS
Gallus gallus
ENSGALG00000010291
N
1.000
RBPMS
Taeniopygia guttata
ENSTGUG00000001776
N
1.000
RBPMS
Anolis carolinensis
ENSACAG00000003012
N
1.000
RGD1561067
Rattus norvegicus
ENSRNOG00000013328
N
1.000
RBPMS
Procavia capensis
ENSPCAG00000013493
N
1.000
RBPMS
Sus scrofa
ENSSSCG00000015846
N
1.000
ENSPPYG00000018487
Pongo pygmaeus
ENSPPYG00000018487
N
1.000
RBPMS
Pan troglodytes
ENSPTRG00000020135
N
1.000
RBPMS
Ochotona princeps
ENSOPRG00000013151
N
1.000
RBPMS
Pteropus vampyrus
ENSPVAG00000001661
N
1.000
RBPMS
Sorex araneus
ENSSARG00000000274
N
0.984
RBPMS
Tursiops truncatus
ENSTTRG00000012451
N
0.984
RBPMS
Oryzias latipes
ENSORLG00000004135
N
0.969
RBPMS
Tarsius syrichta
ENSTSYG00000013982
N
0.969
RBPMS
Gasterosteus aculeatus
ENSGACG00000019471
N
0.969
RBPMS
Takifugu rubripes
ENSTRUG00000000041
N
0.969
RBPMS2
Oryzias latipes
ENSORLG00000001493
N
0.953
RBPMS2
Danio rerio
ENSDARG00000045930
N
0.953
RBPMS2
Anolis carolinensis
ENSACAG00000012227
N
0.938
RBPMS2
Takifugu rubripes
ENSTRUG00000016625
N
0.938
rbpms2
Danio rerio
ENSDARG00000079578
N
0.923
RBPMS2
Taeniopygia guttata
ENSTGUG00000004722
N
0.923
RBPMS2
Meleagris gallopavo
ENSMGAG00000001128
N
0.923
RBPMS2
Monodelphis domestica
ENSMODG00000010487
N
0.923
RBPMS_CHICK
Gallus gallus
ENSGALG00000002355
N
0.923
RBPMS2
Gasterosteus aculeatus
ENSGACG00000017472
N
0.922
ENSXETG00000010668
Xenopus tropicalis
ENSXETG00000010668
N
0.908
RBPMS2
Procavia capensis
ENSPCAG00000015797
N
0.908
RBPMS2
Spermophilus tridecemlineatus
ENSSTOG00000010055
N
0.908
RBPMS2
Tursiops truncatus
ENSTTRG00000011840
N
0.908
Rbpms2
Mus musculus
ENSMUSG00000032387
N
0.908
RBPMS2
Ornithorhynchus anatinus
ENSOANG00000011802
N
0.908
RBPMS2
Oryctolagus cuniculus
ENSOCUG00000010388
N
0.908
RBPMS2
Myotis lucifugus
ENSMLUG00000013394
N
0.908
AAH97507
Xenopus laevis
AAH97507
N
0.908
RBPMS2
Loxodonta africana
ENSLAFG00000018725
N
0.908
RBPMS2
Felis catus
ENSFCAG00000011333
N
0.908
AAH81153
Xenopus laevis
AAH81153
N
0.908
RBPMS2
Pteropus vampyrus
ENSPVAG00000016622
N
0.908
RBPMS2
Sus scrofa
ENSSSCG00000004549
N
0.908
RBPMS2
Canis familiaris
ENSCAFG00000017098
N
0.908
AAD16971
Xenopus laevis
AAD16971
N
0.908
RBPMS2
Bos taurus
ENSBTAG00000011037
N
0.908
Rbpms2
Rattus norvegicus
ENSRNOG00000015896
N
0.908
Q9YGP5
Xenopus laevis
Q9YGP5
N
0.908
A5YBM9_HORSE
Equus caballus
ENSECAG00000015345
N
0.908
Ame_R002022
Ailuropoda melanoleuca
Ame_R002022
N
0.908
Rbpms2
Dipodomys ordii
ENSDORG00000004025
N
0.894
RBPMS2
Macaca mulatta
ENSMMUG00000013270
N
0.892
LOC100409527
Callithrix jacchus
ENSCJAG00000005200
N
0.892
RBPMS2
Homo sapiens
ENSG00000166831
N
0.892
RBPMS2
Echinops telfairi
ENSETEG00000010176
N
0.892
RBPMS2
Pan troglodytes
ENSPTRG00000007165
N
0.892
RBPMS2
Gorilla gorilla
ENSGGOG00000008984
N
0.892
RBPMS2
Cavia porcellus
ENSCPOG00000007695
N
0.892
RBPMS2
Microcebus murinus
ENSMICG00000007355
N
0.877
RBPMS2
Ochotona princeps
ENSOPRG00000013668
N
0.848
e_gw.368.37.1
Branchiostoma floridae
e_gw.368.37.1
I
0.766
RBPMS
Otolemur garnettii
ENSOGAG00000006285
N
0.731
ENSPPYG00000006553
Pongo pygmaeus
ENSPPYG00000006553
N
0.714