CPSF6 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000013893 T40218_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000017418 RRM 83 154

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPSF6 Gasterosteus aculeatus ENSGACG00000019685 N 0.958
cpsf6 Danio rerio ENSDARG00000018618 N 0.931
CPSF6 Tetraodon nigroviridis ENSTNIG00000007576 N 0.903
CPSF6 Takifugu rubripes ENSTRUG00000016461 N 0.889
CPSF6 Homo sapiens ENSG00000111605 N 0.861
CPSF6 Oryctolagus cuniculus ENSOCUG00000013505 N 0.861
CPSF6_CHICK Gallus gallus ENSGALG00000019355 N 0.861
CPSF6 Echinops telfairi ENSETEG00000002097 N 0.861
CPSF6 Equus caballus ENSECAG00000015988 N 0.861
CPSF6 Cavia porcellus ENSCPOG00000015201 N 0.861
CPSF6 Ochotona princeps ENSOPRG00000005199 N 0.861
CPSF6 Gorilla gorilla ENSGGOG00000008211 N 0.861
CPSF6 Loxodonta africana ENSLAFG00000030413 N 0.861
CPSF6 Microcebus murinus ENSMICG00000007385 N 0.861
CPSF6 Myotis lucifugus ENSMLUG00000004172 N 0.861
CPSF6 Meleagris gallopavo ENSMGAG00000010552 N 0.861
CPSF6 Monodelphis domestica ENSMODG00000007123 N 0.861
CPSF6 Macropus eugenii ENSMEUG00000015041 N 0.861
CPSF6 Procavia capensis ENSPCAG00000011574 N 0.861
CPSF6 Macaca mulatta ENSMMUG00000002921 N 0.861
LOC100393328 Callithrix jacchus ENSCJAG00000001798 N 0.861
CPSF6 Sorex araneus ENSSARG00000006743 N 0.861
CPSF6 Tarsius syrichta ENSTSYG00000008591 N 0.861
Cpsf6 Rattus norvegicus ENSRNOG00000005927 N 0.861
CPSF6 Pteropus vampyrus ENSPVAG00000015753 N 0.861
ENSPPYG00000004756 Pongo pygmaeus ENSPPYG00000004756 N 0.861
CPSF6 Pan troglodytes ENSPTRG00000005205 N 0.861
Ame_R010435 Ailuropoda melanoleuca Ame_R010435 N 0.861
CPSF6 Vicugna pacos ENSVPAG00000008469 N 0.861
CPSF6 Anolis carolinensis ENSACAG00000004381 N 0.861
CPSF6_BOVIN Bos taurus ENSBTAG00000007323 N 0.861
CPSF6 Canis familiaris ENSCAFG00000000424 N 0.861
Cpsf6 Mus musculus ENSMUSG00000055531 N 0.847
CPSF6 Ornithorhynchus anatinus ENSOANG00000005944 N 0.847
CPSF6 Erinaceus europaeus ENSEEUG00000015039 N 0.833
AAH77388 Xenopus laevis AAH77388 N 0.806
Q6DDW4 Xenopus laevis Q6DDW4 N 0.806
CPSF6 Tursiops truncatus ENSTTRG00000013934 N 0.792
CPSF6 Taeniopygia guttata ENSTGUG00000006884 N 0.778
CPSF6 Tupaia belangeri ENSTBEG00000015367 N 0.736
CPSF6 Felis catus ENSFCAG00000002855 N 0.736
CPSF6 Choloepus hoffmanni ENSCHOG00000011169 N 0.736
Cpsf6 Dipodomys ordii ENSDORG00000002950 N 0.736
ISCW006578 Ixodes scapularis ISCW006578 N 0.708