CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ISCW006578
(
Ixodes scapularis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ISCW006578
T44831_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ISCW006578-PA
RRM
81
152
IYIGNLTWWTTDQDVTDAISAVGVNDVLDIKFFENRANGQSKGFCIVTLGSDSSFRAVMDKLPKKELHGQNP
Links
Other
RRM
family RBPs
Other
Ixodes scapularis
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.618.13.1
Capitella teleta
e_gw1.618.13.1
N
0.750
cpsf6
Danio rerio
ENSDARG00000018618
N
0.750
CPIJ004892
Culex quinquefasciatus
CPIJ004892
N
0.736
AAEL017164
Aedes aegypti
AAEL017164
N
0.736
CpipJ_CPIJ004892
Culex pipiens
CpipJ_CPIJ004892
N
0.736
DGIL_AUG5s15867g5t1
Acyrtosiphon pisum
DGIL_AUG5s15867g5t1
N
0.722
CPSF6
Oryzias latipes
ENSORLG00000013893
N
0.708
AGAP005062
Anopheles gambiae
AGAP005062
N
0.708