CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DNAJC17
(
Pteropus vampyrus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPVAG00000001843
T40838_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000001742
RRM
184
243
ELKGGYSRDVLLRLFQKYGEVLNLVLSSKKTGTAVVEFATVKAAELAVQNEVGLVNNPLK
Links
Other
RRM
family RBPs
Other
Pteropus vampyrus
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100057200
Equus caballus
ENSECAG00000019839
N
0.933
DNAJC17
Loxodonta africana
ENSLAFG00000014731
N
0.883
DNAJC17
Gorilla gorilla
ENSGGOG00000000051
N
0.867
ENSCJAG00000013145
Callithrix jacchus
ENSCJAG00000013145
N
0.867
DNAJC17
Macaca mulatta
ENSMMUG00000013160
N
0.867
ENSPPYG00000006360
Pongo pygmaeus
ENSPPYG00000006360
N
0.867
DNAJC17
Otolemur garnettii
ENSOGAG00000000528
N
0.867
DNAJC17
Canis familiaris
ENSCAFG00000009322
N
0.867
DNAJC17
Homo sapiens
ENSG00000104129
N
0.867
DNAJC17
Tursiops truncatus
ENSTTRG00000011417
N
0.867
DJC17_BOVIN
Bos taurus
ENSBTAG00000013480
N
0.867
DNAJC17
Sus scrofa
ENSSSCG00000004762
N
0.850
ENSMLUG00000014835
Myotis lucifugus
ENSMLUG00000014835
N
0.850
DNAJC17
Choloepus hoffmanni
ENSCHOG00000009650
N
0.850
DNAJC17
Felis catus
ENSFCAG00000014715
N
0.850
DNAJC17
Pan troglodytes
ENSPTRG00000006929
N
0.850
LOC100409885
Callithrix jacchus
ENSCJAG00000020803
N
0.833
DNAJC17
Microcebus murinus
ENSMICG00000005953
N
0.817
DNAJC17
Monodelphis domestica
ENSMODG00000000225
N
0.817
DNAJC17
Oryctolagus cuniculus
ENSOCUG00000005573
N
0.817
DNAJC17
Tupaia belangeri
ENSTBEG00000014488
N
0.817
DNAJC17
Cavia porcellus
ENSCPOG00000014110
N
0.817
Dnajc17
Dipodomys ordii
ENSDORG00000000579
N
0.817
ENSGGOG00000028423
Gorilla gorilla
ENSGGOG00000028423
N
0.817
DNAJC17
Ochotona princeps
ENSOPRG00000016047
N
0.800
DNAJC17
Macropus eugenii
ENSMEUG00000005641
N
0.800
Dnajc17
Mus musculus
ENSMUSG00000034278
N
0.783
Dnajc17
Rattus norvegicus
ENSRNOG00000012368
N
0.767
DNAJC17
Anolis carolinensis
ENSACAG00000003311
N
0.767
DNAJC17
Taeniopygia guttata
ENSTGUG00000006661
N
0.750
DNAJC17
Procavia capensis
ENSPCAG00000000374
N
0.733
RGD1565752
Rattus norvegicus
ENSRNOG00000038337
N
0.717
DNAJC17
Gallus gallus
ENSGALG00000023982
N
0.717
DNAJC17
Meleagris gallopavo
ENSMGAG00000002902
N
0.717