CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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D3ZSC3_RAT
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000027915
T41188_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000030987
RRM
15
51
LLIGGLSFETTDKSLRSHFEQWGTLTDCVVMKEIQGL
ENSRNOP00000030987
RRM
96
165
IFVGGIKEDTEEHPLRDYFEQYGKIEVIEIMIDRGSGQKRGFAFVTFDYHDSVDKIVIQKYRTVNGHNCE
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCPOG00000020972
Cavia porcellus
ENSCPOG00000020972
N
0.770
ENSCAFG00000017240
Canis familiaris
ENSCAFG00000017240
N
0.739
ENSCAFG00000017467
Canis familiaris
ENSCAFG00000017467
I
0.730
ENSMMUG00000017582
Macaca mulatta
ENSMMUG00000017582
N
0.722
ENSCAFG00000017180
Canis familiaris
ENSCAFG00000017180
N
0.708