ENSCAFG00000017467 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000017467 T35161_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.704
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.704
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000031534 RRM 16 60
ENSCAFP00000031534 RRM 102 167

Links

Other RRM family RBPs
Other Canis familiaris RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000017240 Canis familiaris ENSCAFG00000017240 N 0.769
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.764
ENSCAFG00000017180 Canis familiaris ENSCAFG00000017180 N 0.752
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.752
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.744
ENSMMUG00000017582 Macaca mulatta ENSMMUG00000017582 N 0.744
ENSCPOG00000020972 Cavia porcellus ENSCPOG00000020972 N 0.741
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.736
ENSETEG00000012394 Echinops telfairi ENSETEG00000012394 N 0.735
ENSBTAG00000012502 Bos taurus ENSBTAG00000012502 I 0.734
D3ZSC3_RAT Rattus norvegicus ENSRNOG00000027915 N 0.730
ENSCAFG00000000389 Canis familiaris ENSCAFG00000000389 N 0.726
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.721
ENSETEG00000007429 Echinops telfairi ENSETEG00000007429 N 0.720
ENSCAFG00000010467 Canis familiaris ENSCAFG00000010467 I 0.719
ENSBTAG00000012763 Bos taurus ENSBTAG00000012763 N 0.718
XP_854259.1 Canis familiaris ENSCAFG00000009673 N 0.701
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.701