CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM18
(
Sus scrofa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSSCG00000005531
T41424_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000005927
RRM
27
100
LWIGNLDPKITEYHLLKLLQKFGTVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIHCLNGKLALSKKLV
Links
Other
RRM
family RBPs
Other
Sus scrofa
RBPs
28 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM18
Vicugna pacos
ENSVPAG00000008618
N
0.986
LOC100067544
Equus caballus
ENSECAG00000024639
N
0.986
RBM18
Canis familiaris
ENSCAFG00000020274
N
0.986
Ame_R003783
Ailuropoda melanoleuca
Ame_R003783
N
0.986
RBM18
Pteropus vampyrus
ENSPVAG00000000863
N
0.986
RBM18
Macaca mulatta
ENSMMUG00000011455
N
0.973
RBM18
Loxodonta africana
ENSLAFG00000012134
N
0.973
Rbm18
Mus musculus
ENSMUSG00000026889
N
0.973
RBM18
Otolemur garnettii
ENSOGAG00000015104
N
0.973
ENSPPYG00000019569
Pongo pygmaeus
ENSPPYG00000019569
N
0.973
RBM18
Procavia capensis
ENSPCAG00000011245
N
0.973
RBM18
Gorilla gorilla
ENSGGOG00000011052
N
0.973
RBM18
Ochotona princeps
ENSOPRG00000010381
N
0.973
RBM18
Pan troglodytes
ENSPTRG00000021323
N
0.973
RBM18
Homo sapiens
ENSG00000119446
N
0.973
LOC100393108
Callithrix jacchus
ENSCJAG00000020116
N
0.973
RBM18_BOVIN
Bos taurus
ENSBTAG00000016367
N
0.973
Rbm18
Dipodomys ordii
ENSDORG00000015862
N
0.973
RBM18
Cavia porcellus
ENSCPOG00000013811
N
0.973
RBM18
Echinops telfairi
ENSETEG00000009832
N
0.973
RBM18
Gallus gallus
ENSGALG00000001339
N
0.959
RBM18
Oryctolagus cuniculus
ENSOCUG00000008527
N
0.959
Rbm18
Rattus norvegicus
ENSRNOG00000006763
N
0.959
RBM18
Felis catus
ENSFCAG00000011188
N
0.946
rbm18
Xenopus tropicalis
ENSXETG00000016328
N
0.919
AAH81007
Xenopus laevis
AAH81007
N
0.919
Q66J99
Xenopus laevis
Q66J99
N
0.919
RBM18
Ornithorhynchus anatinus
ENSOANG00000008200
N
0.800