CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC5
(
Sus scrofa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSSCG00000009067
T41455_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000009677
RRM
1
29
XYVNFLQLADALKALDTMNFDLIKGKSIR
ENSSSCP00000009677
RRM
47
115
VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLF
ENSSSCP00000009677
RRM
139
208
VYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLF
ENSSSCP00000009677
RRM
242
310
LYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLN
Links
Other
RRM
family RBPs
Other
Sus scrofa
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSG00000250177
Homo sapiens
ENSG00000250177
I
0.781
PABPC4L
Callithrix jacchus
ENSCJAG00000003241
I
0.767