PABPC4L (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000003241 T35490_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.717
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000005895 RRM 12 82
ENSCJAP00000005895 RRM 100 168
ENSCJAP00000005895 RRM 192 261
ENSCJAP00000005895 RRM 295 363

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSG00000250177 Homo sapiens ENSG00000250177 I 0.982
ENSMMUG00000007193 Macaca mulatta ENSMMUG00000007193 N 0.816
Pabpc4l Rattus norvegicus ENSRNOG00000029749 N 0.804
PABPC5 Sus scrofa ENSSSCG00000009067 N 0.767
AAH73435 Xenopus laevis AAH73435 I 0.742
PABPC4 Gallus gallus ENSGALG00000003800 I 0.742
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.742
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.739
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.736
pabpc4 Danio rerio ENSDARG00000059259 I 0.724
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.724
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.724
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.724
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.721
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.721
LOC100054235 Equus caballus ENSECAG00000009396 I 0.721
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.721
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.721
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.721
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.721
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.721
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.721
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.721
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.721
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.717
PABPC4 Homo sapiens ENSG00000090621 D 0.717
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.717
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.717
Gm10110 Mus musculus ENSMUSG00000062093 I 0.717
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.717
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.714
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.714
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.714
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.710