PTBP1 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000000034 T41544_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.708
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.708
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000000030 RRM 48 92
ENSSTOP00000000030 RRM 166 232
ENSSTOP00000000030 RRM 312 358
ENSSTOP00000000030 RRM 415 471

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

4 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.709
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.709
PTBP1 Homo sapiens ENSG00000011304 D 0.709
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.707