CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPN1
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000002538
T41566_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000002271
RRM
57
98
IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGX
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPN1
Ochotona princeps
ENSOPRG00000016461
N
1.000
PABPN1
Choloepus hoffmanni
ENSCHOG00000004798
N
1.000
PABPN1
Microcebus murinus
ENSMICG00000010002
N
1.000
XP_002163279.1
Hydra magnipapillata
XP_002163279.1
N
0.822
PABPN1L
Homo sapiens
ENSG00000205022
I
0.773
ENSDNOG00000023682
Dasypus novemcinctus
ENSDNOG00000023682
N
0.714