PABPN1L (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000205022 T37350_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPN1
M148_0.6 		Homo sapiens ARAAGA RNAcompete
Ray et al.(2013)
RNCMPT00157 		0.743
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000367609 RRM 149 218
ENSP00000405259 RRM 149 192
ENSP00000408598 RRM 149 218

Links

Other RRM family RBPs
Other Homo sapiens RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPN1L Pan troglodytes ENSPTRG00000031120 I 1.000
XM_001117810.1 Macaca mulatta ENSMMUG00000029383 I 0.986
XM_001100533.1 Macaca mulatta ENSMMUG00000012438 I 0.986
ENSPPYG00000007655 Pongo pygmaeus ENSPPYG00000007655 I 0.986
EPAB2_RAT Rattus norvegicus ENSRNOG00000029558 I 0.871
PABPN1L Otolemur garnettii ENSOGAG00000000433 I 0.845
PABPN1L Tursiops truncatus ENSTTRG00000004691 N 0.829
Pabpn1l Mus musculus ENSMUSG00000069867 N 0.829
PABPN1L Pteropus vampyrus ENSPVAG00000002716 I 0.829
PABPN1L Bos taurus ENSBTAG00000023752 N 0.829
PABPN1L Erinaceus europaeus ENSEEUG00000004747 N 0.829
PABPN1L Cavia porcellus ENSCPOG00000025951 I 0.817
PABPN1L Sus scrofa ENSSSCG00000002647 N 0.803
PABPN1L Ornithorhynchus anatinus ENSOANG00000013901 I 0.800
PABPN1L Microcebus murinus ENSMICG00000006298 N 0.800
PABPN1L Loxodonta africana ENSLAFG00000025902 I 0.800
PABPN1L Ochotona princeps ENSOPRG00000005597 I 0.800
PABPN1 Gallus gallus ENSGALG00000006242 I 0.800
LOC100051357 Equus caballus ENSECAG00000000378 I 0.775
PABPN1 Ochotona princeps ENSOPRG00000016461 N 0.773
PABPN1 Choloepus hoffmanni ENSCHOG00000004798 N 0.773
PABPN1 Spermophilus tridecemlineatus ENSSTOG00000002538 N 0.773
PABPN1 Microcebus murinus ENSMICG00000010002 N 0.773
PABPN1L Anolis carolinensis ENSACAG00000013250 I 0.757
PABPN1L Myotis lucifugus ENSMLUG00000003228 N 0.757
PABPN1 Myotis lucifugus ENSMLUG00000012452 I 0.757
pabpn1 Danio rerio ENSDARG00000045373 I 0.746
Ame_R020627 Ailuropoda melanoleuca Ame_R020627 I 0.743
AAO33927 Xenopus laevis AAO33927 N 0.743
Q804A5 Xenopus laevis Q804A5 N 0.743
LOC100396934 Callithrix jacchus ENSCJAG00000007960 I 0.743
LOC100055599 Equus caballus ENSECAG00000011652 I 0.743
PABPN1 Homo sapiens ENSG00000100836 D 0.743
Pabpn1 Dipodomys ordii ENSDORG00000002873 I 0.743
PABPN1 Cavia porcellus ENSCPOG00000025574 I 0.743
PABP2_BOVIN Bos taurus ENSBTAG00000006884 I 0.743
B2CL2_CANFA Canis familiaris ENSCAFG00000011482 I 0.743
ENSBTAG00000001853 Bos taurus ENSBTAG00000001853 I 0.743
e_gw1.14.113.1 Trichoplax adhaerens e_gw1.14.113.1 I 0.743
PABPN1 Otolemur garnettii ENSOGAG00000008710 I 0.743
PABPN1 Oryctolagus cuniculus ENSOCUG00000016174 I 0.743
ENSPPYG00000005663 Pongo pygmaeus ENSPPYG00000005663 I 0.743
PABPN1 Pan troglodytes ENSPTRG00000006168 I 0.743
PABPN1 Pteropus vampyrus ENSPVAG00000005270 I 0.743
PABPN1 Ornithorhynchus anatinus ENSOANG00000009218 I 0.743
Pabpn1 Mus musculus ENSMUSG00000022194 I 0.743
PABPN1 Loxodonta africana ENSLAFG00000031227 I 0.743
PABPN1 Gorilla gorilla ENSGGOG00000022683 I 0.743
PABPN1 Macaca mulatta ENSMMUG00000014747 I 0.743
PABPN1L Monodelphis domestica ENSMODG00000003873 N 0.743
PABPN1 Monodelphis domestica ENSMODG00000004535 I 0.743
Pabpn1 Rattus norvegicus ENSRNOG00000042195 I 0.743
PABPN1 Sus scrofa ENSSSCG00000002023 I 0.743
LOAG_03634 Loa loa LOAG_03634 I 0.732
PABPN1 Takifugu rubripes ENSTRUG00000006554 I 0.732
WUBG_04965 Wuchereria bancrofti WUBG_04965 I 0.732
PABPN1 Oryzias latipes ENSORLG00000006136 I 0.732
fgenesh2_pm.scaffold_317000002 Branchiostoma floridae fgenesh2_pm.scaffold_317000002 I 0.732
PABPN1 Gasterosteus aculeatus ENSGACG00000002167 I 0.732
Bm1_48895 Brugia malayi Bm1_48895 I 0.732
PABPN1 Tetraodon nigroviridis ENSTNIG00000005369 I 0.732
AAG36902 Xenopus laevis AAG36902 I 0.729
AAH45063 Xenopus laevis AAH45063 I 0.729
2JWN_B Xenopus laevis 2JWN_B I 0.729
2JWN_A Xenopus laevis 2JWN_A I 0.729
AAI70311 Xenopus laevis AAI70311 I 0.729
AAH73657 Xenopus laevis AAH73657 I 0.729
Q7ZXB8 Xenopus laevis Q7ZXB8 I 0.729
AAR26263 Xenopus laevis AAR26263 I 0.729
Q9DDY9 Xenopus laevis Q9DDY9 I 0.729
AAR26262 Xenopus laevis AAR26262 I 0.729
pabpn1l Xenopus tropicalis ENSXETG00000011258 I 0.729
AAI70309 Xenopus laevis AAI70309 I 0.729
Q6TY21 Xenopus laevis Q6TY21 I 0.729
estExt_Genewise1Plus.C_2670068 Capitella teleta estExt_Genewise1Plus.C_2670068 I 0.714
PABPN1 Anolis carolinensis ENSACAG00000006185 I 0.714
RO3G_09831 Rhizopus oryzae RO3G_09831 N 0.714
pabpn1 Xenopus tropicalis ENSXETG00000014597 I 0.714
XP_002163279.1 Hydra magnipapillata XP_002163279.1 N 0.711
e_gw.21.136.1 Nematostella vectensis e_gw.21.136.1 I 0.704
BGIBMGA001950 Bombyx mori BGIBMGA001950 I 0.700
ENSEEUG00000012973 Erinaceus europaeus ENSEEUG00000012973 I 0.700
PHUM037550 Pediculus humanus PHUM037550 I 0.700
XP_002163300.1 Hydra magnipapillata XP_002163300.1 I 0.700
amel4_ncbi_hmm446 Apis mellifera amel4_ncbi_hmm446 I 0.700