CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RNPC3
(
Taeniopygia guttata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTGUG00000004795
T41895_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000004937
RRM
1
32
KHTAFATFPSENAAAKALSRLHQLKLLGHTLV
ENSTGUP00000004937
RRM
352
427
VYVKNLAKQVQEKDLKFIFGRYVDFQSEVERNMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFEKPMV
Links
Other
RRM
family RBPs
Other
Taeniopygia guttata
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RNPC3
Meleagris gallopavo
ENSMGAG00000006381
N
0.963
RNPC3
Ornithorhynchus anatinus
ENSOANG00000008220
N
0.835
Rnpc3
Mus musculus
ENSMUSG00000027981
N
0.785
RNPC3
Gallus gallus
ENSGALG00000005162
N
0.722