CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RNPC3
(
Gallus gallus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGALG00000005162
T37642_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000008278
RRM
6
73
LLVRHLPAELTVAEKEDLLQHFGAVAVRVLSDHGRLKHTAFATFPSENAAVKALSRLHQLKLLGHTLV
ENSGALP00000008278
RRM
395
470
IYVKNLAKQVQEKDLKFIFGRYVDFQSVLERNMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFEKPMV
Links
Other
RRM
family RBPs
Other
Gallus gallus
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RNPC3
Oryctolagus cuniculus
ENSOCUG00000004016
N
0.875
RBM40_BOVIN
Bos taurus
ENSBTAG00000019091
N
0.875
RNPC3
Canis familiaris
ENSCAFG00000019972
N
0.868
LOC100393797
Callithrix jacchus
ENSCJAG00000031625
N
0.868
RNPC3
Homo sapiens
ENSG00000185946
N
0.868
RNPC3
Sus scrofa
ENSSSCG00000006856
N
0.863
RNPC3
Macaca mulatta
ENSMMUG00000018039
N
0.861
RNPC3
Monodelphis domestica
ENSMODG00000002946
N
0.861
Rnpc3
Mus musculus
ENSMUSG00000027981
N
0.861
Rnpc3
Rattus norvegicus
ENSRNOG00000017310
N
0.861
RNPC3
Loxodonta africana
ENSLAFG00000032342
N
0.861
RNPC3
Anolis carolinensis
ENSACAG00000002029
N
0.847
RNPC3
Ornithorhynchus anatinus
ENSOANG00000008220
N
0.757
RNPC3
Meleagris gallopavo
ENSMGAG00000006381
N
0.736
RNPC3
Gasterosteus aculeatus
ENSGACG00000002048
N
0.729
RNPC3
Taeniopygia guttata
ENSTGUG00000004795
N
0.722
rnpc3
Danio rerio
ENSDARG00000011247
N
0.715