CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPA0
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000007398
T42049_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000010204
RRM
8
77
LFVGGLNVDTDDDGLRKHFEQFGTLTDCVVVVNKQVQRSRCFGFVTYSTPEEADSAMAARPHTVDGNPVE
ENSTNIP00000010204
RRM
99
168
IFVGGLKDDTEENHLTEHFSQFGEIEKAEVISDKETGKKRGFGFVYFVDQDSADKSVVIKFHTINGHKVE
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPA0
Takifugu rubripes
ENSTRUG00000015362
N
0.964
HNRNPA0
Oryzias latipes
ENSORLG00000000221
N
0.886
HNRNPA0
Gasterosteus aculeatus
ENSGACG00000016447
N
0.886
hnrnpa0
Danio rerio
ENSDARG00000036162
N
0.800
ENSDARG00000029260
Danio rerio
ENSDARG00000029260
N
0.793
hnrnpa0l
Danio rerio
ENSDARG00000036161
N
0.764
HNRNPA0
Monodelphis domestica
ENSMODG00000014720
N
0.721
HNRNPA0
Macaca mulatta
ENSMMUG00000011929
N
0.721
Hnrnpa0
Mus musculus
ENSMUSG00000007836
N
0.721
HNRNPA0
Sus scrofa
ENSSSCG00000014322
N
0.721
HNRNPA0
Pan troglodytes
ENSPTRG00000017273
N
0.721
ENSPPYG00000015814
Pongo pygmaeus
ENSPPYG00000015814
N
0.721
HNRNPA0
Oryctolagus cuniculus
ENSOCUG00000005703
N
0.721
ENSMEUG00000013675
Macropus eugenii
ENSMEUG00000013675
N
0.721
HNRNPA0
Gorilla gorilla
ENSGGOG00000023303
N
0.721
HNRNPA0
Canis familiaris
ENSCAFG00000001132
N
0.721
A1L532_BOVIN
Bos taurus
ENSBTAG00000016929
N
0.721
Ame_R010989
Ailuropoda melanoleuca
Ame_R010989
N
0.721
HNRNPA0
Tursiops truncatus
ENSTTRG00000000499
N
0.721
HNRNPA0
Loxodonta africana
ENSLAFG00000028290
N
0.721
HNRNPA0
Cavia porcellus
ENSCPOG00000026092
N
0.721
LOC100399260
Callithrix jacchus
ENSCJAG00000006112
N
0.721
HNRNPA0
Homo sapiens
ENSG00000177733
N
0.721
HNRNPA0
Oryzias latipes
ENSORLG00000020611
N
0.714
HNRNPA0
Oryzias latipes
ENSORLG00000000196
N
0.707