CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HNRNPA0
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000016447
T37541_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000021715
RRM
12
81
LFVGGLNVDTDDDGLRKHFEQYGSLTDCVVVVNKQLQRSRCFGFVTYSSPEEADAAMAARPHTVDGNAVE
ENSGACP00000021715
RRM
103
172
IFVGGLKDDIEEEHLTEYFSQYGEIEKAEVISEKETGKKRGFGFVYFTDHDAADKAVVVKFHTINGHKVE
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
HNRNPA0
Oryzias latipes
ENSORLG00000000221
N
0.936
HNRNPA0
Tetraodon nigroviridis
ENSTNIG00000007398
N
0.886
HNRNPA0
Takifugu rubripes
ENSTRUG00000015362
N
0.864
hnrnpa0l
Danio rerio
ENSDARG00000036161
N
0.800
ENSDARG00000029260
Danio rerio
ENSDARG00000029260
N
0.800
hnrnpa0
Danio rerio
ENSDARG00000036162
N
0.793
HNRNPA0
Oryzias latipes
ENSORLG00000000196
N
0.757
HNRNPA0
Oryzias latipes
ENSORLG00000020611
N
0.750
A1L532_BOVIN
Bos taurus
ENSBTAG00000016929
N
0.721
Ame_R010989
Ailuropoda melanoleuca
Ame_R010989
N
0.721
HNRNPA0
Tursiops truncatus
ENSTTRG00000000499
N
0.721
HNRNPA0
Canis familiaris
ENSCAFG00000001132
N
0.721
HNRNPA0
Homo sapiens
ENSG00000177733
N
0.721
ENSMEUG00000013675
Macropus eugenii
ENSMEUG00000013675
N
0.721
LOC100399260
Callithrix jacchus
ENSCJAG00000006112
N
0.721
HNRNPA0
Cavia porcellus
ENSCPOG00000026092
N
0.721
HNRNPA0
Loxodonta africana
ENSLAFG00000028290
N
0.721
HNRNPA0
Oryctolagus cuniculus
ENSOCUG00000005703
N
0.721
HNRNPA0
Gorilla gorilla
ENSGGOG00000023303
N
0.721
Hnrnpa0
Mus musculus
ENSMUSG00000007836
N
0.721
HNRNPA0
Monodelphis domestica
ENSMODG00000014720
N
0.721
HNRNPA0
Macaca mulatta
ENSMMUG00000011929
N
0.721
ENSPPYG00000015814
Pongo pygmaeus
ENSPPYG00000015814
N
0.721
HNRNPA0
Pan troglodytes
ENSPTRG00000017273
N
0.721
HNRNPA0
Sus scrofa
ENSSSCG00000014322
N
0.721
HNRNPA0
Gallus gallus
ENSGALG00000006160
N
0.707
HNRNPA0
Meleagris gallopavo
ENSMGAG00000007915
N
0.707
hnrnpa0
Xenopus tropicalis
ENSXETG00000003833
N
0.700
AAH41277
Xenopus laevis
AAH41277
N
0.700
AAI06306
Xenopus laevis
AAI06306
N
0.700
AAH71067
Xenopus laevis
AAH71067
N
0.700