CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EIF3B
(
Tarsius syrichta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTSYG00000008256
T42470_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000007570
RRM
28
87
EKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT
Links
Other
RRM
family RBPs
Other
Tarsius syrichta
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XR_023016.1
Pan troglodytes
ENSPTRG00000018860
N
0.967
LOC100059693
Equus caballus
ENSECAG00000013671
N
0.967
EIF3B
Oryctolagus cuniculus
ENSOCUG00000010289
N
0.967
ENSPPYG00000017313
Pongo pygmaeus
ENSPPYG00000017313
N
0.967
EIF3B
Microcebus murinus
ENSMICG00000010103
N
0.967
EIF3B
Macaca mulatta
ENSMMUG00000015529
N
0.967
EIF3B
Homo sapiens
ENSG00000106263
N
0.967
ENSCPOG00000020547
Cavia porcellus
ENSCPOG00000020547
N
0.950
ENSCPOG00000012541
Cavia porcellus
ENSCPOG00000012541
N
0.950
EIF3B
Pteropus vampyrus
ENSPVAG00000013735
N
0.950
EIF3B
Sorex araneus
ENSSARG00000006036
N
0.950
EIF3B
Callithrix jacchus
ENSCJAG00000001442
N
0.950
EIF3B
Loxodonta africana
ENSLAFG00000001540
N
0.933
EIF3B
Myotis lucifugus
ENSMLUG00000013740
N
0.933
EIF3B
Felis catus
ENSFCAG00000005392
N
0.933
EIF3B
Tursiops truncatus
ENSTTRG00000014713
N
0.933
Eif3b
Dipodomys ordii
ENSDORG00000001401
N
0.933
Eif3b
Rattus norvegicus
ENSRNOG00000001253
N
0.933
EIF3B
Canis familiaris
ENSCAFG00000016418
N
0.933
EIF3B_BOVIN
Bos taurus
ENSBTAG00000007474
N
0.933
Eif3b
Mus musculus
ENSMUSG00000056076
N
0.933
EIF3B
Monodelphis domestica
ENSMODG00000009778
N
0.917
EIF3B
Echinops telfairi
ENSETEG00000001719
N
0.917
EIF3B
Sus scrofa
ENSSSCG00000007571
N
0.917
EIF3B
Erinaceus europaeus
ENSEEUG00000014359
N
0.900
EIF3B
Ornithorhynchus anatinus
ENSOANG00000004314
N
0.900
EIF3B
Taeniopygia guttata
ENSTGUG00000008140
N
0.883
EIF3B
Gallus gallus
ENSGALG00000004269
N
0.883
EIF3B
Meleagris gallopavo
ENSMGAG00000002719
N
0.883
ENSACAG00000008874
Anolis carolinensis
ENSACAG00000008874
N
0.850
EIF3B
Otolemur garnettii
ENSOGAG00000006319
N
0.850
si:dkey-26i13.2
Danio rerio
ENSDARG00000074213
N
0.817
EIF3B
Oryzias latipes
ENSORLG00000008861
N
0.817
EIF3B
Takifugu rubripes
ENSTRUG00000011064
N
0.817
EIF3B
Tetraodon nigroviridis
ENSTNIG00000004648
N
0.800
Q569Z1
Xenopus laevis
Q569Z1
N
0.800
AAH92246
Xenopus laevis
AAH92246
N
0.800
EIF3B
Gasterosteus aculeatus
ENSGACG00000016738
N
0.783
eif3b
Xenopus tropicalis
ENSXETG00000020593
N
0.750
estExt_fgenesh2_pg.C_10400005
Branchiostoma floridae
estExt_fgenesh2_pg.C_10400005
N
0.721
estExt_fgenesh2_pg.C_5260005
Branchiostoma floridae
estExt_fgenesh2_pg.C_5260005
N
0.721