CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF6
(
Vicugna pacos
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSVPAG00000003016
T42720_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSVPAP00000002787
RRM
4
31
VYIGRLSYNVREKDIQRFFSGYGRXXXX
ENSVPAP00000002787
RRM
112
177
LIVKNLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR
Links
Other
RRM
family RBPs
Other
Vicugna pacos
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SRSF6
Felis catus
ENSFCAG00000013915
N
0.926
SRSF6
Otolemur garnettii
ENSOGAG00000014468
N
0.874
SRSF6
Choloepus hoffmanni
ENSCHOG00000000561
N
0.874
SRSF6_RABIT
Oryctolagus cuniculus
ENSOCUG00000009785
N
0.848
SRSF6
Macaca mulatta
ENSMMUG00000006742
N
0.840
SRSF6
Sus scrofa
ENSSSCG00000007362
N
0.832
SRSF6
Gallus gallus
ENSGALG00000000990
N
0.821
Ame_R005284
Ailuropoda melanoleuca
Ame_R005284
N
0.809
SRSF4
Echinops telfairi
ENSETEG00000009774
N
0.748