CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GF11923
(
Drosophila ananassae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0088962
T43211_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0115115
RRM
224
297
LYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQRGRNCGFVAYMSRKDAERALRALNCRYIMGNKMQ
Links
Other
RRM
family RBPs
Other
Drosophila ananassae
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GE12157
Drosophila yakuba
FBgn0229923
N
0.932
GG22076
Drosophila erecta
FBgn0114251
N
0.932
GI21069
Drosophila mojavensis
FBgn0143801
N
0.932
GH20523
Drosophila grimshawi
FBgn0127986
N
0.932
GJ21992
Drosophila virilis
FBgn0209106
N
0.932
CG9346
Drosophila melanogaster
FBgn0034572
N
0.919
GK22959
Drosophila willistoni
FBgn0224921
N
0.919
GD11555
Drosophila simulans
FBgn0183296
N
0.919
GM15794
Drosophila sechellia
FBgn0170710
N
0.919
GL10142
Drosophila persimilis
FBgn0147752
N
0.878
GA21718-RA
Drosophila pseudoobscura
FBgn0081703
N
0.878
AGAP005006
Anopheles gambiae
AGAP005006
N
0.838
CPIJ014539
Culex quinquefasciatus
CPIJ014539
N
0.811
CpipJ_CPIJ014539
Culex pipiens
CpipJ_CPIJ014539
N
0.811
AAEL012045
Aedes aegypti
AAEL012045
N
0.811
BGIBMGA003602
Bombyx mori
BGIBMGA003602
N
0.797
amel4_ncbi_hmm17771
Tribolium castaneum
amel4_ncbi_hmm17771
N
0.797
amel4_ncbi_hmm17771
Apis mellifera
amel4_ncbi_hmm17771
N
0.797
DGIL_AUG5s8618g4t1
Acyrtosiphon pisum
DGIL_AUG5s8618g4t1
N
0.770
DGIL_AUG5s11505g3t1
Acyrtosiphon pisum
DGIL_AUG5s11505g3t1
N
0.757
nasonia_NCBI_hmm274824
Nasonia vitripennis
nasonia_NCBI_hmm274824
N
0.757
PHUM176690
Pediculus humanus
PHUM176690
N
0.730