CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s11505g3t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s11505g3t1
T31977_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s11505g3t1
RRM
137
210
LYLGNLNPKITEAQLKEVFGKYGPLASIKIMWPRSDEEKARGRNCGFVAYMSRKDGERALKNLNGKDVMSYEMK
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s8618g4t1
Acyrtosiphon pisum
DGIL_AUG5s8618g4t1
N
0.986
amel4_ncbi_hmm17771
Apis mellifera
amel4_ncbi_hmm17771
N
0.892
amel4_ncbi_hmm17771
Tribolium castaneum
amel4_ncbi_hmm17771
N
0.892
nasonia_NCBI_hmm274824
Nasonia vitripennis
nasonia_NCBI_hmm274824
N
0.865
BGIBMGA003602
Bombyx mori
BGIBMGA003602
N
0.851
PHUM176690
Pediculus humanus
PHUM176690
N
0.838
CpipJ_CPIJ014539
Culex pipiens
CpipJ_CPIJ014539
N
0.838
CPIJ014539
Culex quinquefasciatus
CPIJ014539
N
0.838
GM15794
Drosophila sechellia
FBgn0170710
N
0.811
GK22959
Drosophila willistoni
FBgn0224921
N
0.811
GL10142
Drosophila persimilis
FBgn0147752
N
0.811
GD11555
Drosophila simulans
FBgn0183296
N
0.811
GA21718-RA
Drosophila pseudoobscura
FBgn0081703
N
0.811
CG9346
Drosophila melanogaster
FBgn0034572
N
0.811
AGAP005006
Anopheles gambiae
AGAP005006
N
0.811
AAEL012045
Aedes aegypti
AAEL012045
N
0.811
GE12157
Drosophila yakuba
FBgn0229923
N
0.797
GH20523
Drosophila grimshawi
FBgn0127986
N
0.797
GI21069
Drosophila mojavensis
FBgn0143801
N
0.797
GG22076
Drosophila erecta
FBgn0114251
N
0.797
GJ21992
Drosophila virilis
FBgn0209106
N
0.797
GF11923
Drosophila ananassae
FBgn0088962
N
0.757
estExt_Genewise1.C_650028
Daphnia pulex
estExt_Genewise1.C_650028
N
0.743
Sjc_0023880
Schistosoma japonicum
Sjc_0023880
N
0.730
Smp_161730
Schistosoma mansoni
Smp_161730
N
0.730
e_gw1.134.6.1
Lottia gigantea
e_gw1.134.6.1
N
0.716
e_gw1.11.101.1
Capitella teleta
e_gw1.11.101.1
N
0.716